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deprecated-clinvar-missense

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test · 47.7k rows

chrom stringclasses 24 values	pos int64 47.1k 248M	id stringlengths 1 7	ref stringclasses 4 values	alt stringclasses 4 values	clin_sig stringclasses 2 values	review_status stringclasses 5 values	consequence stringclasses 71 values	CADD float64 -12.41 2.86	phyloP float64 -10 20	phastCons float64 -1 -0	ESM-1b float64 -25.89 12.8 ⌀
1	930,165	1164676	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-4.225333	-5.113	-1	-8.967
1	930,204	1170208	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-2.879554	-3.43	-1	-5.529
1	930,285	1165489	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-0.091394	-0.322	-0.107	-4.687
1	930,314	1170010	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-2.481464	-3.747	-0.081	-4.295
1	935,779	1167937	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-1.831757	-2.981	-1	-2.864
1	939,429	1167351	G	C	Benign	criteria_provided,_single_submitter	intron_variant,missense_variant	-0.313022	0.492	-0	-1.728
1	942,451	1166513	T	C	Benign	criteria_provided,_single_submitter	missense_variant	-1.997533	-1.367	-0.656	8.487
1	942,930	1169836	T	C	Benign	criteria_provided,_single_submitter	missense_variant	-0.46896	0.204	-0	-1.218
1	942,945	1170437	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-0.523057	0.755	-0	-4.383
1	942,951	1170505	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-0.69239	0.13	-0	-4.413
1	944,001	1164573	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-1.909588	-0.814	-0.002	-7.529
1	944,004	1164106	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-0.009384	0.304	-0	-4.172
1	944,029	1168053	C	G	Benign	criteria_provided,_single_submitter	missense_variant	-2.31958	-1.335	-0.001	-3.925
1	944,101	780745	G	C	Benign	criteria_provided,_single_submitter	missense_variant	-2.087584	-2.811	-1	-6.228
1	966,542	782833	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-2.509645	-0.169	-0.004	-10.15
1	966,543	782834	C	A	Benign	criteria_provided,_single_submitter	missense_variant	-3.16139	0.285	-0	-9.608
1	972,895	770481	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-0.504602	-1.814	-0.061	-3.092
1	973,842	791106	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-1.832995	-2.734	-0.063	-4.53
1	1,014,042	475283	G	A	Benign	criteria_provided,_single_submitter	missense_variant	0.443816	0.676	-0	-5.595
1	1,014,228	402986	G	A	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-0.027262	0.396	-0	-4.136
1	1,020,183	387476	G	C	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-0.812271	1.405	-0	-3.27
1	1,022,313	243037	A	T	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.210583	-5.733	-1	-3.284
1	1,041,583	128291	A	G	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	1.129235	1.898	-0	-2.423
1	1,044,368	128294	A	T	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-4.190468	-5.452	-1	-6.692
1	1,045,751	263173	A	G	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	0.143737	0.151	-0	-2.091
1	1,047,342	128299	A	G	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-3.744859	-2.004	-1	-7.347
1	1,048,126	128304	C	T	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	0.616387	2.607	-0	-4.836
1	1,048,900	703974	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-0.043271	-0.272	-0.519	-3.147
1	1,050,446	128312	G	A	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-1.744586	-0.812	-0.947	-6.132
1	1,050,449	1284257	G	A	Pathogenic	no_assertion_criteria_provided	missense_variant	-3.882619	-5.271	-1	-7.674
1	1,050,575	18241	G	C	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.095325	-9.276	-1	-13.196
1	1,050,763	126555	G	T	Pathogenic	no_assertion_criteria_provided	missense_variant	-3.767892	-3.928	-1	-11.977
1	1,213,738	96692	G	A	Pathogenic	no_assertion_criteria_provided	missense_variant	-1.622702	0.097	-0	-9.152
1	1,214,100	474794	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-1.398429	0.34	-0	-4.77
1	1,232,279	60484	A	G	Pathogenic	criteria_provided,_multiple_submitters,_no_conflicts	initiatior_codon_variant,missense_variant	-2.298613	-2.027	-0.925	null
1	1,232,280	1452181	T	C	Pathogenic	criteria_provided,_single_submitter	initiatior_codon_variant,missense_variant	-2.745302	-1.175	-0.99	null
1	1,232,294	60493	C	T	Pathogenic	no_assertion_criteria_provided	missense_variant	-3.156854	-2.011	-0.011	-6.582
1	1,232,387	800256	G	A	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-0.606681	1.233	-0	-3.335
1	1,232,471	60488	A	G	Pathogenic	no_assertion_criteria_provided	missense_variant	-2.945049	-2.086	-0.997	-11.587
1	1,232,478	60489	C	T	Pathogenic	criteria_provided,_single_submitter	missense_variant	-3.931606	-2.033	-0.993	-9.659
1	1,232,735	390636	C	A	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-3.915694	-2.68	-1	-11.996
1	1,232,744	60486	G	A	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.68026	-7.4	-1	-10.741
1	1,232,754	869983	C	A	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.121125	-4.766	-1	-15.88
1	1,232,800	281204	G	C	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-0.830179	-0.466	-0.998	-2.994
1	1,232,834	522415	T	C	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.516843	-3.777	-1	-6.756
1	1,232,896	869985	C	G	Pathogenic	no_assertion_criteria_provided	missense_variant	-3.667146	0.325	-0.335	-14.467
1	1,232,897	60495	G	C	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.542989	-6.691	-1	-10.692
1	1,232,927	60496	G	A	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.493109	-6.663	-1	-13.48
1	1,233,044	996067	C	T	Pathogenic	criteria_provided,_single_submitter	missense_variant	-4.400743	-2.068	-1	-12.325
1	1,233,177	60487	G	C	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.25814	-5.541	-1	-13.798
1	1,233,203	60491	T	A	Pathogenic	no_assertion_criteria_provided	missense_variant	-3.938952	-5.873	-1	-9.292
1	1,242,601	789547	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-0.625257	0.6	-0	-4.845
1	1,242,864	772646	G	C	Benign	criteria_provided,_single_submitter	missense_variant	0.148836	-0.36	-0	0.345
1	1,332,630	775486	G	T	Benign	criteria_provided,_single_submitter	missense_variant	-3.222589	-1.914	-0.937	-5.17
1	1,334,108	1222088	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-0.004351	-0.198	-0	-6.573
1	1,336,269	1600778	A	G	Benign	criteria_provided,_single_submitter	missense_variant	-0.170895	-0.321	-0.459	-2.601
1	1,336,404	1535754	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-1.085777	-0.985	-0.014	-3.064
1	1,336,428	722475	C	A	Benign	criteria_provided,_single_submitter	missense_variant	-3.522542	-6.589	-1	-8.601
1	1,336,467	1166885	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-2.948811	-1.555	-0.882	-7.468
1	1,340,312	1599156	G	A	Benign	criteria_provided,_single_submitter	missense_variant	-3.946704	-9.832	-1	-13.608
1	1,340,424	599454	G	C	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-2.798378	-2.056	-0.454	-5.409
1	1,341,749	1611353	G	C	Benign	criteria_provided,_single_submitter	missense_variant	-1.244569	-1.429	-0.979	-2.602
1	1,341,803	1169213	C	T	Benign	criteria_provided,_multiple_submitters,_no_conflicts	missense_variant	-0.188021	-0.139	-0.014	-4.991
1	1,437,393	781924	C	T	Benign	criteria_provided,_single_submitter	missense_variant,synonymous_variant	0.482969	6.112	-0	-4.539
1	1,439,425	1229112	G	C	Benign	criteria_provided,_single_submitter	3_prime_UTR_variant,missense_variant	0.426661	2.109	-0	-2.55
1	1,454,394	1253304	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-2.71155	-5.155	-1	-6.919
1	1,477,279	780746	G	T	Benign	criteria_provided,_single_submitter	missense_variant	-3.226881	-7.939	-1	-4.851
1	1,495,783	786444	G	A	Benign	criteria_provided,_single_submitter	missense_variant	0.714693	0.107	-0	-4.288
1	1,495,785	767642	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-0.047896	0.81	-0	-3.32
1	1,512,287	1675332	A	G	Benign	criteria_provided,_single_submitter	missense_variant	-1.664855	-0.859	-0.738	-4.941
1	1,516,036	828051	T	G	Pathogenic	no_assertion_criteria_provided	5_prime_UTR_variant,missense_variant	-3.368562	-6.341	-0.992	-3.651
1	1,523,535	791764	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-1.60955	-2.402	-1	-8.344
1	1,525,242	637018	T	G	Pathogenic	criteria_provided,_single_submitter	missense_variant	-3.512934	-6.29	-1	-16.213
1	1,527,718	1685550	A	G	Pathogenic	criteria_provided,_single_submitter	missense_variant	-2.774607	-5.907	-1	-9.9
1	1,527,777	791767	G	C	Benign	criteria_provided,_single_submitter	missense_variant	-1.125781	-3.741	-0.628	-10.657
1	1,535,370	161196	G	A	Pathogenic	criteria_provided,_single_submitter	missense_variant	-4.262362	-1.591	-0.966	-5.859
1	1,535,427	1235425	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-0.095812	-0.301	-0.004	-3.649
1	1,535,616	161194	G	A	Pathogenic	no_assertion_criteria_provided	missense_variant	-4.118985	-2.772	-1	-4.685
1	1,535,619	523023	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-3.489369	-2.753	-0.989	-5.215
1	1,535,723	161195	G	A	Pathogenic	criteria_provided,_single_submitter	missense_variant	-3.741044	-5.617	-1	-4.354
1	1,626,711	780208	G	A	Benign	criteria_provided,_single_submitter	missense_variant,non-coding_transcript_variant	-1.337381	-1.936	-0.862	-10.223
1	1,757,140	791769	C	A	Benign	criteria_provided,_single_submitter	intron_variant,missense_variant	-0.470473	-0.634	-0.001	-4.774
1	1,759,182	716793	G	A	Benign	criteria_provided,_single_submitter	intron_variant,missense_variant	-1.049697	-0.053	-0.002	-3.677
1	1,759,828	716794	G	A	Benign	criteria_provided,_single_submitter	intron_variant,missense_variant	0.046505	-0.008	-0	-4.718
1	1,789,242	995963	T	C	Pathogenic	no_assertion_criteria_provided	missense_variant	-3.893146	-7.889	-1	-15.005
1	1,790,444	1551623	A	G	Benign	criteria_provided,_single_submitter	missense_variant	-2.533852	-9.101	-1	-4.293
1	1,790,578	1610568	C	G	Benign	criteria_provided,_single_submitter	missense_variant	-3.084199	-1.134	-1	-6.134
1	1,793,270	1594453	C	T	Benign	criteria_provided,_single_submitter	missense_variant	-2.061848	-3.345	-0.996	-4.001
1	1,804,496	521213	T	C	Pathogenic	criteria_provided,_single_submitter	missense_variant	-4.523403	-7.839	-1	-15.496
1	1,804,497	812755	C	A	Pathogenic	criteria_provided,_single_submitter	missense_variant	-4.21045	-7.729	-1	-15.91
1	1,804,502	1194565	C	A	Pathogenic	criteria_provided,_single_submitter	missense_variant	-3.918063	-7.729	-1	-17.041
1	1,804,508	1315581	C	T	Pathogenic	no_assertion_criteria_provided	missense_variant	-3.913554	-7.729	-1	-16.842
1	1,804,562	995962	C	A	Pathogenic	no_assertion_criteria_provided	5_prime_UTR_variant,missense_variant	-3.636235	-7.729	-1	-16.534
1	1,804,575	633546	C	T	Pathogenic	criteria_provided,_multiple_submitters,_no_conflicts	5_prime_UTR_variant,missense_variant	-3.542664	-7.729	-1	-8.686
1	1,806,503	391609	A	C	Pathogenic	criteria_provided,_single_submitter	5_prime_UTR_variant,missense_variant	-4.387314	-9.083	-1	-15.412
1	1,806,503	224715	A	T	Pathogenic	criteria_provided,_multiple_submitters,_no_conflicts	5_prime_UTR_variant,missense_variant	-4.256918	-9.083	-1	-13.221
1	1,806,512	1315582	C	A	Pathogenic	no_assertion_criteria_provided	5_prime_UTR_variant,missense_variant	-3.826645	-7.706	-1	-21.37
1	1,806,513	1700090	C	A	Pathogenic	criteria_provided,_single_submitter	5_prime_UTR_variant,missense_variant	-4.119774	-7.706	-1	-12.053
1	1,806,514	1699320	A	T	Pathogenic	criteria_provided,_single_submitter	5_prime_UTR_variant,missense_variant	-3.207073	-2.553	-1	-12.567
1	1,806,515	224711	T	C	Pathogenic	criteria_provided,_multiple_submitters,_no_conflicts	5_prime_UTR_variant,missense_variant	-4.491082	-7.815	-1	-13.055

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