tonic-discharge-guard / callbackmanager.py
sanggusti's picture
Had to debug this on the prod, sigh
85e2206
raw
history blame
18.7 kB
import gradio as gr
from meldrx import MeldRxAPI
import json
import os
import tempfile
from datetime import datetime
# Import PDF utilities
from pdfutils import PDFGenerator, generate_discharge_summary
class CallbackManager:
def __init__(self, redirect_uri: str, client_secret: str = None):
client_id = os.getenv("APPID")
if not client_id:
raise ValueError("APPID environment variable not set.")
workspace_id = os.getenv("WORKSPACE_URL")
if not workspace_id:
raise ValueError("WORKSPACE_URL environment variable not set.")
self.api = MeldRxAPI(client_id, client_secret, workspace_id, redirect_uri)
self.auth_code = None
self.access_token = None
def get_auth_url(self) -> str:
return self.api.get_authorization_url()
def set_auth_code(self, code: str) -> str:
self.auth_code = code
if self.api.authenticate_with_code(code):
self.access_token = self.api.access_token
return f"Authentication successful! Access Token: {self.access_token[:10]}... (truncated)"
return "Authentication failed. Please check the code."
def get_patient_data(self) -> str:
if not self.access_token:
return "Not authenticated. Please provide a valid authorization code first."
patients = self.api.get_patients()
if patients is not None:
return json.dumps(patients, indent=2) if patients else "No patient data returned."
return "Failed to retrieve patient data."
def get_patient_documents(self, patient_id: str = None):
"""Fetch patient documents from MeldRx"""
if not self.access_token:
return "Not authenticated. Please provide a valid authorization code first."
try:
# This would call the actual MeldRx API to get documents for a specific patient
# For demonstration, we'll return mock document data
return [
{
"doc_id": "doc123",
"type": "clinical_note",
"date": "2023-01-16",
"author": "Dr. Sample Doctor",
"content": "Patient presented with symptoms of respiratory distress...",
},
{
"doc_id": "doc124",
"type": "lab_result",
"date": "2023-01-17",
"author": "Lab System",
"content": "CBC results: WBC 7.5, RBC 4.2, Hgb 14.1...",
}
]
except Exception as e:
return f"Error retrieving patient documents: {str(e)}"
def display_form(
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
):
form = f"""
**Patient Discharge Form**
- Name: {first_name} {middle_initial} {last_name}
- Date of Birth: {dob}, Age: {age}, Sex: {sex}
- Address: {address}, {city}, {state}, {zip_code}
- Doctor: {doctor_first_name} {doctor_middle_initial} {doctor_last_name}
- Hospital/Clinic: {hospital_name}
- Doctor Address: {doctor_address}, {doctor_city}, {doctor_state}, {doctor_zip}
- Admission Date: {admission_date}, Source: {referral_source}, Method: {admission_method}
- Discharge Date: {discharge_date}, Reason: {discharge_reason}
- Date of Death: {date_of_death}
- Diagnosis: {diagnosis}
- Procedures: {procedures}
- Medications: {medications}
- Prepared By: {preparer_name}, {preparer_job_title}
"""
return form
def process_fhir_bundle(fhir_bundle):
"""Extract and structure patient data from FHIR bundle"""
patients = []
for entry in fhir_bundle.get("entry", []):
resource = entry.get("resource", {})
if resource.get("resourceType") == "Patient":
patients.append(resource)
return patients
def create_patient_stripe(patient):
"""Create a UI stripe for an individual patient with enhanced functionality"""
# Safely extract name components
official_name = next(
(n for n in patient.get("name", []) if n.get("use") == "official"),
{}
)
given_names = " ".join(official_name.get("given", ["Unknown"]))
family_name = official_name.get("family", "Unknown")
# Extract demographic information
gender = patient.get("gender", "unknown").capitalize()
birth_date = patient.get("birthDate", "Unknown")
patient_id = patient.get("id", "Unknown")
# Extract address information
address = patient.get("address", [{}])[0]
city = address.get("city", "Unknown")
state = address.get("state", "")
postal_code = address.get("postalCode", "")
with gr.Row(variant="panel") as stripe:
with gr.Column(scale=3):
gr.Markdown(f"""
**{given_names} {family_name}**
*{gender} | Born: {birth_date}*
{city}, {state} {postal_code}
""")
gr.Textbox(patient_id, label="Patient ID", visible=False)
with gr.Column(scale=1):
status = gr.Dropdown(
choices=["Pending", "Reviewed", "Approved", "Rejected"],
value="Pending",
label="Review Status"
)
with gr.Column(scale=1):
generate_btn = gr.Button("Generate Report", visible=False)
probability = gr.Label("Risk Probability", visible=False)
documents_btn = gr.Button("View Documents", visible=True)
# Dynamic visibility and document handling
def update_components(selected_status):
visible = selected_status in ["Reviewed", "Approved"]
return (
gr.Button(visible=visible),
gr.Label(visible=visible, value={"Low": 0.3, "Medium": 0.6, "High": 0.9}.get(selected_status, 0.5))
)
def show_documents(patient_id):
return CALLBACK_MANAGER.get_patient_documents(patient_id)
status.change(
update_components,
inputs=status,
outputs=[generate_btn, probability]
)
documents_btn.click(
fn=show_documents,
inputs=patient_id,
outputs=gr.JSON(label="Patient Documents")
)
return stripe
def generate_pdf_from_form(
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
):
"""Generate a PDF discharge form using the provided data"""
# Create PDF generator
pdf_gen = PDFGenerator()
# Format data for PDF generation
patient_info = {
"first_name": first_name,
"last_name": last_name,
"dob": dob,
"age": age,
"sex": sex,
"mobile": "", # Not collected in the form
"address": address,
"city": city,
"state": state,
"zip": zip_code
}
discharge_info = {
"date_of_admission": admission_date,
"date_of_discharge": discharge_date,
"source_of_admission": referral_source,
"mode_of_admission": admission_method,
"discharge_against_advice": "Yes" if discharge_reason == "Discharge Against Advice" else "No"
}
diagnosis_info = {
"diagnosis": diagnosis,
"operation_procedure": procedures,
"treatment": "", # Not collected in the form
"follow_up": "" # Not collected in the form
}
medication_info = {
"medications": [medications] if medications else [],
"instructions": "" # Not collected in the form
}
prepared_by = {
"name": preparer_name,
"title": preparer_job_title,
"signature": "" # Not collected in the form
}
# Generate PDF
pdf_buffer = pdf_gen.generate_discharge_form(
patient_info,
discharge_info,
diagnosis_info,
medication_info,
prepared_by
)
# Create temporary file to save the PDF
temp_file = tempfile.NamedTemporaryFile(delete=False, suffix='.pdf')
temp_file.write(pdf_buffer.read())
temp_file_path = temp_file.name
temp_file.close()
return temp_file_path
def generate_pdf_from_meldrx(patient_data):
"""Generate a PDF using patient data from MeldRx"""
if isinstance(patient_data, str):
# If it's a string (error message or JSON string), try to parse it
try:
patient_data = json.loads(patient_data)
except:
return None, "Invalid patient data format"
if not patient_data:
return None, "No patient data available"
try:
# For demonstration, we'll use the first patient in the list if it's a list
if isinstance(patient_data, list) and len(patient_data):
patient = patient_data[0]
else:
patient = patient_data
# Extract patient info
patient_info = {
"name": f"{patient.get('name', {}).get('given', [''])[0]} {patient.get('name', {}).get('family', '')}",
"dob": patient.get('birthDate', 'Unknown'),
"patient_id": patient.get('id', 'Unknown'),
"admission_date": datetime.now().strftime("%Y-%m-%d"), # Mock data
"physician": "Dr. Provider" # Mock data
}
# Mock LLM-generated content
llm_content = {
"diagnosis": "Diagnosis information would be generated by LLM",
"treatment": "Treatment summary would be generated by LLM",
"medications": "Medication list would be generated by LLM",
"follow_up": "Follow-up instructions would be generated by LLM",
"special_instructions": "Special instructions would be generated by LLM"
}
# Create discharge summary
output_dir = tempfile.mkdtemp()
pdf_path = generate_discharge_summary(patient_info, llm_content, output_dir)
return pdf_path, "PDF generated successfully"
except Exception as e:
return None, f"Error generating PDF: {str(e)}"
CALLBACK_MANAGER = CallbackManager(
redirect_uri="https://multitransformer-discharge-guard.hf.space/callback",
client_secret=None
)
with gr.Blocks() as demo:
gr.Markdown("# Patient Discharge Form with MeldRx Integration")
with gr.Tab("Authenticate with MeldRx"):
gr.Markdown("## SMART on FHIR Authentication")
auth_url_output = gr.Textbox(label="Authorization URL", value=CALLBACK_MANAGER.get_auth_url(), interactive=False)
gr.Markdown("Copy the URL above, open it in a browser, log in, and paste the 'code' from the redirect URL below.")
auth_code_input = gr.Textbox(label="Authorization Code")
auth_submit = gr.Button("Submit Code")
auth_result = gr.Textbox(label="Authentication Result")
patient_data_button = gr.Button("Fetch Patient Data")
patient_data_output = gr.Textbox(label="Patient Data")
# Add button to generate PDF from MeldRx data
meldrx_pdf_button = gr.Button("Generate PDF from MeldRx Data")
meldrx_pdf_status = gr.Textbox(label="PDF Generation Status")
meldrx_pdf_download = gr.File(label="Download Generated PDF")
auth_submit.click(fn=CALLBACK_MANAGER.set_auth_code, inputs=auth_code_input, outputs=auth_result)
patient_data_button.click(fn=CALLBACK_MANAGER.get_patient_data, inputs=None, outputs=patient_data_output)
# Add functionality for PDF generation from MeldRx data
meldrx_pdf_button.click(
fn=generate_pdf_from_meldrx,
inputs=patient_data_output,
outputs=[meldrx_pdf_download, meldrx_pdf_status]
)
with gr.tab("Show Patients Log"):
gr.Markdown("## Patient Dashboard")
# Store patient data in a state variable
patient_data_state = gr.State()
# Pagination controls
with gr.Row() as pagination_row:
prev_btn = gr.Button("Previous Page", visible=False)
next_btn = gr.Button("Next Page", visible=False)
# Patient stripes container
patient_stripes = gr.Column()
# Metadata display
metadata_md = gr.Markdown()
# Refresh button
refresh_btn = gr.Button("Refresh Data")
def update_patient_display(patient_data_json):
try:
fhir_bundle = json.loads(patient_data_json)
patients = process_fhir_bundle(fhir_bundle)
# Update pagination controls
has_prev = any(link["relation"] == "previous" for link in fhir_bundle.get("link", []))
has_next = any(link["relation"] == "next" for link in fhir_bundle.get("link", []))
# Create stripes
stripes = []
for patient in patients:
stripes.append(create_patient_stripe(patient))
return (
gr.Row.update(visible=has_prev or has_next),
gr.Column.update(stripes),
gr.Markdown.update(value=f"""
**Bundle Metadata**
Type: {fhir_bundle.get('type', 'Unknown')}
Total Patients: {fhir_bundle.get('total', 0)}
Last Updated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
"""),
{"patients": patients, "bundle": fhir_bundle}
)
except Exception as e:
return (
gr.Row.update(visible=False),
gr.Column.update([]),
gr.Markdown.update(value=f"Error loading patient data: {str(e)}"),
None
)
# Connect data flow
patient_data_output.change(
fn=update_patient_display,
inputs=patient_data_output,
outputs=[pagination_row, patient_stripes, metadata_md, patient_data_state]
)
refresh_btn.click(
fn=lambda: CALLBACK_MANAGER.get_patient_data(),
outputs=patient_data_output
)
with gr.Tab("Discharge Form"):
gr.Markdown("## Patient Details")
with gr.Row():
first_name = gr.Textbox(label="First Name")
last_name = gr.Textbox(label="Last Name")
middle_initial = gr.Textbox(label="Middle Initial")
with gr.Row():
dob = gr.Textbox(label="Date of Birth")
age = gr.Textbox(label="Age")
sex = gr.Textbox(label="Sex")
address = gr.Textbox(label="Address")
with gr.Row():
city = gr.Textbox(label="City")
state = gr.Textbox(label="State")
zip_code = gr.Textbox(label="Zip Code")
gr.Markdown("## Primary Healthcare Professional Details")
with gr.Row():
doctor_first_name = gr.Textbox(label="Doctor's First Name")
doctor_last_name = gr.Textbox(label="Doctor's Last Name")
doctor_middle_initial = gr.Textbox(label="Middle Initial")
hospital_name = gr.Textbox(label="Hospital/Clinic Name")
doctor_address = gr.Textbox(label="Address")
with gr.Row():
doctor_city = gr.Textbox(label="City")
doctor_state = gr.Textbox(label="State")
doctor_zip = gr.Textbox(label="Zip Code")
gr.Markdown("## Admission and Discharge Details")
with gr.Row():
admission_date = gr.Textbox(label="Date of Admission")
referral_source = gr.Textbox(label="Source of Referral")
admission_method = gr.Textbox(label="Method of Admission")
with gr.Row():
discharge_date = gr.Textbox(label="Date of Discharge")
discharge_reason = gr.Radio(["Treated", "Transferred", "Discharge Against Advice", "Patient Died"], label="Discharge Reason")
date_of_death = gr.Textbox(label="Date of Death (if applicable)")
gr.Markdown("## Diagnosis & Procedures")
diagnosis = gr.Textbox(label="Diagnosis")
procedures = gr.Textbox(label="Operation & Procedures")
gr.Markdown("## Medication Details")
medications = gr.Textbox(label="Medication on Discharge")
gr.Markdown("## Prepared By")
with gr.Row():
preparer_name = gr.Textbox(label="Name")
preparer_job_title = gr.Textbox(label="Job Title")
# Add buttons for both display form and generate PDF
with gr.Row():
submit_display = gr.Button("Display Form")
submit_pdf = gr.Button("Generate PDF")
# Output areas
form_output = gr.Markdown()
pdf_output = gr.File(label="Download PDF")
# Connect the display form button
submit_display.click(
display_form,
inputs=[
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
],
outputs=form_output
)
# Connect the generate PDF button
submit_pdf.click(
generate_pdf_from_form,
inputs=[
first_name, last_name, middle_initial, dob, age, sex, address, city, state, zip_code,
doctor_first_name, doctor_last_name, doctor_middle_initial, hospital_name, doctor_address,
doctor_city, doctor_state, doctor_zip,
admission_date, referral_source, admission_method, discharge_date, discharge_reason, date_of_death,
diagnosis, procedures, medications, preparer_name, preparer_job_title
],
outputs=pdf_output
)
demo.launch()