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Oct 8

SIM-CoT: Supervised Implicit Chain-of-Thought

Implicit Chain-of-Thought (CoT) methods present a promising, token-efficient alternative to explicit CoT reasoning in Large Language Models (LLMs), but a persistent performance gap has limited the application of implicit CoT. We identify a core latent instability issue by scaling the computational budget of implicit CoT approaches: as we increase the number of implicit reasoning tokens to enhance performance, the training process often becomes unstable and collapses. Our analysis reveals that this instability arises from the latent representations becoming homogeneous and losing their semantic diversity, a failure caused by insufficient step-level supervision in existing implicit CoT approaches. To address this issue, we propose SIM-CoT, a plug-and-play training module that introduces step-level supervision to stabilize and enrich the latent reasoning space. Specifically, SIM-CoT employs an auxiliary decoder during training to align each implicit token with its corresponding explicit reasoning step, ensuring that latent states capture distinct and meaningful information. The proposed auxiliary decoder is removed during inference, preserving the computational efficiency of implicit CoT methods with no added overhead. In addition, the auxiliary decoder affords interpretability of implicit reasoning by projecting each latent token onto an explicit reasoning vocabulary, enabling per-step visualization of semantic roles and diagnosis. SIM-CoT significantly enhances both the in-domain accuracy and out-of-domain stability of various implicit CoT methods, boosting baselines like Coconut by +8.2% on GPT-2 and CODI by +3.0% on LLaMA-3.1 8B. Demonstrating strong scalability, SIM-CoT also surpasses the explicit CoT baseline on GPT-2 by 2.1% with 2.3\times greater token efficiency, while substantially closing the performance gap on larger models like LLaMA-3.1 8B.

A versatile informative diffusion model for single-cell ATAC-seq data generation and analysis

The rapid advancement of single-cell ATAC sequencing (scATAC-seq) technologies holds great promise for investigating the heterogeneity of epigenetic landscapes at the cellular level. The amplification process in scATAC-seq experiments often introduces noise due to dropout events, which results in extreme sparsity that hinders accurate analysis. Consequently, there is a significant demand for the generation of high-quality scATAC-seq data in silico. Furthermore, current methodologies are typically task-specific, lacking a versatile framework capable of handling multiple tasks within a single model. In this work, we propose ATAC-Diff, a versatile framework, which is based on a latent diffusion model conditioned on the latent auxiliary variables to adapt for various tasks. ATAC-Diff is the first diffusion model for the scATAC-seq data generation and analysis, composed of auxiliary modules encoding the latent high-level variables to enable the model to learn the semantic information to sample high-quality data. Gaussian Mixture Model (GMM) as the latent prior and auxiliary decoder, the yield variables reserve the refined genomic information beneficial for downstream analyses. Another innovation is the incorporation of mutual information between observed and hidden variables as a regularization term to prevent the model from decoupling from latent variables. Through extensive experiments, we demonstrate that ATAC-Diff achieves high performance in both generation and analysis tasks, outperforming state-of-the-art models.

X-UniMotion: Animating Human Images with Expressive, Unified and Identity-Agnostic Motion Latents

We present X-UniMotion, a unified and expressive implicit latent representation for whole-body human motion, encompassing facial expressions, body poses, and hand gestures. Unlike prior motion transfer methods that rely on explicit skeletal poses and heuristic cross-identity adjustments, our approach encodes multi-granular motion directly from a single image into a compact set of four disentangled latent tokens -- one for facial expression, one for body pose, and one for each hand. These motion latents are both highly expressive and identity-agnostic, enabling high-fidelity, detailed cross-identity motion transfer across subjects with diverse identities, poses, and spatial configurations. To achieve this, we introduce a self-supervised, end-to-end framework that jointly learns the motion encoder and latent representation alongside a DiT-based video generative model, trained on large-scale, diverse human motion datasets. Motion-identity disentanglement is enforced via 2D spatial and color augmentations, as well as synthetic 3D renderings of cross-identity subject pairs under shared poses. Furthermore, we guide motion token learning with auxiliary decoders that promote fine-grained, semantically aligned, and depth-aware motion embeddings. Extensive experiments show that X-UniMotion outperforms state-of-the-art methods, producing highly expressive animations with superior motion fidelity and identity preservation.

ProDepth: Boosting Self-Supervised Multi-Frame Monocular Depth with Probabilistic Fusion

Self-supervised multi-frame monocular depth estimation relies on the geometric consistency between successive frames under the assumption of a static scene. However, the presence of moving objects in dynamic scenes introduces inevitable inconsistencies, causing misaligned multi-frame feature matching and misleading self-supervision during training. In this paper, we propose a novel framework called ProDepth, which effectively addresses the mismatch problem caused by dynamic objects using a probabilistic approach. We initially deduce the uncertainty associated with static scene assumption by adopting an auxiliary decoder. This decoder analyzes inconsistencies embedded in the cost volume, inferring the probability of areas being dynamic. We then directly rectify the erroneous cost volume for dynamic areas through a Probabilistic Cost Volume Modulation (PCVM) module. Specifically, we derive probability distributions of depth candidates from both single-frame and multi-frame cues, modulating the cost volume by adaptively fusing those distributions based on the inferred uncertainty. Additionally, we present a self-supervision loss reweighting strategy that not only masks out incorrect supervision with high uncertainty but also mitigates the risks in remaining possible dynamic areas in accordance with the probability. Our proposed method excels over state-of-the-art approaches in all metrics on both Cityscapes and KITTI datasets, and demonstrates superior generalization ability on the Waymo Open dataset.

Hydra-SGG: Hybrid Relation Assignment for One-stage Scene Graph Generation

DETR introduces a simplified one-stage framework for scene graph generation (SGG) but faces challenges of sparse supervision and false negative samples. The former occurs because each image typically contains fewer than 10 relation annotations, while DETR-based SGG models employ over 100 relation queries. Each ground truth relation is assigned to only one query during training. The latter arises when one ground truth relation may have multiple queries with similar matching scores, leading to suboptimally matched queries being treated as negative samples. To address these, we propose Hydra-SGG, a one-stage SGG method featuring a Hybrid Relation Assignment. This approach combines a One-to-One Relation Assignment with an IoU-based One-to-Many Relation Assignment, increasing positive training samples and mitigating sparse supervision. In addition, we empirically demonstrate that removing self-attention between relation queries leads to duplicate predictions, which actually benefits the proposed One-to-Many Relation Assignment. With this insight, we introduce Hydra Branch, an auxiliary decoder without self-attention layers, to further enhance One-to-Many Relation Assignment by promoting different queries to make the same relation prediction. Hydra-SGG achieves state-of-the-art performance on multiple datasets, including VG150 (16.0 mR@50), Open Images V6 (50.1 weighted score), and GQA (12.7 mR@50).

SemiCD-VL: Visual-Language Model Guidance Makes Better Semi-supervised Change Detector

Change Detection (CD) aims to identify pixels with semantic changes between images. However, annotating massive numbers of pixel-level images is labor-intensive and costly, especially for multi-temporal images, which require pixel-wise comparisons by human experts. Considering the excellent performance of visual language models (VLMs) for zero-shot, open-vocabulary, etc. with prompt-based reasoning, it is promising to utilize VLMs to make better CD under limited labeled data. In this paper, we propose a VLM guidance-based semi-supervised CD method, namely SemiCD-VL. The insight of SemiCD-VL is to synthesize free change labels using VLMs to provide additional supervision signals for unlabeled data. However, almost all current VLMs are designed for single-temporal images and cannot be directly applied to bi- or multi-temporal images. Motivated by this, we first propose a VLM-based mixed change event generation (CEG) strategy to yield pseudo labels for unlabeled CD data. Since the additional supervised signals provided by these VLM-driven pseudo labels may conflict with the pseudo labels from the consistency regularization paradigm (e.g. FixMatch), we propose the dual projection head for de-entangling different signal sources. Further, we explicitly decouple the bi-temporal images semantic representation through two auxiliary segmentation decoders, which are also guided by VLM. Finally, to make the model more adequately capture change representations, we introduce metric-aware supervision by feature-level contrastive loss in auxiliary branches. Extensive experiments show the advantage of SemiCD-VL. For instance, SemiCD-VL improves the FixMatch baseline by +5.3 IoU on WHU-CD and by +2.4 IoU on LEVIR-CD with 5% labels. In addition, our CEG strategy, in an un-supervised manner, can achieve performance far superior to state-of-the-art un-supervised CD methods.

Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction

The diverse nature of protein prediction tasks has traditionally necessitated specialized models, hindering the development of broadly applicable and computationally efficient Protein Language Models (PLMs). In this work, we introduce Prot2Token, a unified framework that overcomes these challenges by converting a wide spectrum of protein-related predictions, from sequence-level properties and residue-specific attributes to complex inter-protein interactions, into a standardized next-token prediction format. At its core, Prot2Token employs an autoregressive decoder, conditioned on embeddings from pre-trained protein encoders and guided by learnable task tokens, to perform diverse predictions. This architecture uniquely facilitates multi-task learning, enabling a single model to master numerous tasks with improved efficiency. We present extensive experimental validation across a variety of benchmarks, demonstrating Prot2Tokens strong predictive power in different types of protein-prediction tasks. Key results include significant speedups (e.g., near 1000x over AlphaFold2 with MSA) and performance often matching or exceeding specialized approaches. Beyond that, we introduce an auxiliary self-supervised decoder pre-training approach to improve spatially sensitive task performance. Prot2Token thus offers a significant step towards a versatile, high-throughput paradigm for protein modeling, promising to accelerate biological discovery and the development of novel therapeutics. The code is available at https://github.com/mahdip72/prot2token .

OneChart: Purify the Chart Structural Extraction via One Auxiliary Token

Chart parsing poses a significant challenge due to the diversity of styles, values, texts, and so forth. Even advanced large vision-language models (LVLMs) with billions of parameters struggle to handle such tasks satisfactorily. To address this, we propose OneChart: a reliable agent specifically devised for the structural extraction of chart information. Similar to popular LVLMs, OneChart incorporates an autoregressive main body. Uniquely, to enhance the reliability of the numerical parts of the output, we introduce an auxiliary token placed at the beginning of the total tokens along with an additional decoder. The numerically optimized (auxiliary) token allows subsequent tokens for chart parsing to capture enhanced numerical features through causal attention. Furthermore, with the aid of the auxiliary token, we have devised a self-evaluation mechanism that enables the model to gauge the reliability of its chart parsing results by providing confidence scores for the generated content. Compared to current state-of-the-art (SOTA) chart parsing models, e.g., DePlot, ChartVLM, ChartAst, OneChart significantly outperforms in Average Precision (AP) for chart structural extraction across multiple public benchmarks, despite enjoying only 0.2 billion parameters. Moreover, as a chart parsing agent, it also brings 10%+ accuracy gains for the popular LVLM (LLaVA-1.6) in the downstream ChartQA benchmark.

Masked Feature Modeling Enhances Adaptive Segmentation

Unsupervised domain adaptation (UDA) for semantic segmentation aims to transfer models from a labeled source domain to an unlabeled target domain. While auxiliary self-supervised tasks-particularly contrastive learning-have improved feature discriminability, masked modeling approaches remain underexplored in this setting, largely due to architectural incompatibility and misaligned optimization objectives. We propose Masked Feature Modeling (MFM), a novel auxiliary task that performs feature masking and reconstruction directly in the feature space. Unlike existing masked modeling methods that reconstruct low-level inputs or perceptual features (e.g., HOG or visual tokens), MFM aligns its learning target with the main segmentation task, ensuring compatibility with standard architectures like DeepLab and DAFormer without modifying the inference pipeline. To facilitate effective reconstruction, we introduce a lightweight auxiliary module, Rebuilder, which is trained jointly but discarded during inference, adding zero computational overhead at test time. Crucially, MFM leverages the segmentation decoder to classify the reconstructed features, tightly coupling the auxiliary objective with the pixel-wise prediction task to avoid interference with the primary task. Extensive experiments across various architectures and UDA benchmarks demonstrate that MFM consistently enhances segmentation performance, offering a simple, efficient, and generalizable strategy for unsupervised domain-adaptive semantic segmentation.

CodecFake+: A Large-Scale Neural Audio Codec-Based Deepfake Speech Dataset

With the rapid advancement of neural audio codecs, codec-based speech generation (CoSG) systems have become highly powerful. Unfortunately, CoSG also enables the creation of highly realistic deepfake speech, making it easier to mimic an individual's voice and spread misinformation. We refer to this emerging deepfake speech generated by CoSG systems as CodecFake. Detecting such CodecFake is an urgent challenge, yet most existing systems primarily focus on detecting fake speech generated by traditional speech synthesis models. In this paper, we introduce CodecFake+, a large-scale dataset designed to advance CodecFake detection. To our knowledge, CodecFake+ is the largest dataset encompassing the most diverse range of codec architectures. The training set is generated through re-synthesis using 31 publicly available open-source codec models, while the evaluation set includes web-sourced data from 17 advanced CoSG models. We also propose a comprehensive taxonomy that categorizes codecs by their root components: vector quantizer, auxiliary objectives, and decoder types. Our proposed dataset and taxonomy enable detailed analysis at multiple levels to discern the key factors for successful CodecFake detection. At the individual codec level, we validate the effectiveness of using codec re-synthesized speech (CoRS) as training data for large-scale CodecFake detection. At the taxonomy level, we show that detection performance is strongest when the re-synthesis model incorporates disentanglement auxiliary objectives or a frequency-domain decoder. Furthermore, from the perspective of using all the CoRS training data, we show that our proposed taxonomy can be used to select better training data for improving detection performance. Overall, we envision that CodecFake+ will be a valuable resource for both general and fine-grained exploration to develop better anti-spoofing models against CodecFake.

DETRs with Collaborative Hybrid Assignments Training

In this paper, we provide the observation that too few queries assigned as positive samples in DETR with one-to-one set matching leads to sparse supervision on the encoder's output which considerably hurt the discriminative feature learning of the encoder and vice visa for attention learning in the decoder. To alleviate this, we present a novel collaborative hybrid assignments training scheme, namely Co-DETR, to learn more efficient and effective DETR-based detectors from versatile label assignment manners. This new training scheme can easily enhance the encoder's learning ability in end-to-end detectors by training the multiple parallel auxiliary heads supervised by one-to-many label assignments such as ATSS and Faster RCNN. In addition, we conduct extra customized positive queries by extracting the positive coordinates from these auxiliary heads to improve the training efficiency of positive samples in the decoder. In inference, these auxiliary heads are discarded and thus our method introduces no additional parameters and computational cost to the original detector while requiring no hand-crafted non-maximum suppression (NMS). We conduct extensive experiments to evaluate the effectiveness of the proposed approach on DETR variants, including DAB-DETR, Deformable-DETR, and DINO-Deformable-DETR. The state-of-the-art DINO-Deformable-DETR with Swin-L can be improved from 58.5% to 59.5% AP on COCO val. Surprisingly, incorporated with ViT-L backbone, we achieve 66.0% AP on COCO test-dev and 67.9% AP on LVIS val, outperforming previous methods by clear margins with much fewer model sizes. Codes are available at https://github.com/Sense-X/Co-DETR.

An Extendable, Efficient and Effective Transformer-based Object Detector

Transformers have been widely used in numerous vision problems especially for visual recognition and detection. Detection transformers are the first fully end-to-end learning systems for object detection, while vision transformers are the first fully transformer-based architecture for image classification. In this paper, we integrate Vision and Detection Transformers (ViDT) to construct an effective and efficient object detector. ViDT introduces a reconfigured attention module to extend the recent Swin Transformer to be a standalone object detector, followed by a computationally efficient transformer decoder that exploits multi-scale features and auxiliary techniques essential to boost the detection performance without much increase in computational load. In addition, we extend it to ViDT+ to support joint-task learning for object detection and instance segmentation. Specifically, we attach an efficient multi-scale feature fusion layer and utilize two more auxiliary training losses, IoU-aware loss and token labeling loss. Extensive evaluation results on the Microsoft COCO benchmark dataset demonstrate that ViDT obtains the best AP and latency trade-off among existing fully transformer-based object detectors, and its extended ViDT+ achieves 53.2AP owing to its high scalability for large models. The source code and trained models are available at https://github.com/naver-ai/vidt.

Large-scale Transfer Learning for Low-resource Spoken Language Understanding

End-to-end Spoken Language Understanding (SLU) models are made increasingly large and complex to achieve the state-ofthe-art accuracy. However, the increased complexity of a model can also introduce high risk of over-fitting, which is a major challenge in SLU tasks due to the limitation of available data. In this paper, we propose an attention-based SLU model together with three encoder enhancement strategies to overcome data sparsity challenge. The first strategy focuses on the transferlearning approach to improve feature extraction capability of the encoder. It is implemented by pre-training the encoder component with a quantity of Automatic Speech Recognition annotated data relying on the standard Transformer architecture and then fine-tuning the SLU model with a small amount of target labelled data. The second strategy adopts multitask learning strategy, the SLU model integrates the speech recognition model by sharing the same underlying encoder, such that improving robustness and generalization ability. The third strategy, learning from Component Fusion (CF) idea, involves a Bidirectional Encoder Representation from Transformer (BERT) model and aims to boost the capability of the decoder with an auxiliary network. It hence reduces the risk of over-fitting and augments the ability of the underlying encoder, indirectly. Experiments on the FluentAI dataset show that cross-language transfer learning and multi-task strategies have been improved by up to 4:52% and 3:89% respectively, compared to the baseline.