akridge commited on
Commit
6861879
·
verified ·
1 Parent(s): 8adf9a8

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +70 -40
README.md CHANGED
@@ -4,10 +4,12 @@ task_categories:
4
  tags:
5
  - coral
6
  - bleaching
7
- - coral reef
8
  - underwater-imagery
9
  - marine-biology
10
- pretty_name: NOAA-ESD-CORAL-Bleaching-Dataset
 
 
11
  language:
12
  - en
13
  configs:
@@ -28,70 +30,98 @@ configs:
28
  - CORAL_BL/*.jpg
29
  ---
30
  # Dataset Card for NOAA-ESD-CORAL-Bleaching-Dataset
31
- This dataset contains underwater imagery collected by NOAA's ESD-ARP.
32
 
33
- The dataset is intended for training and evaluating models.
34
 
35
- |Label| Name |Functional Group|
36
- |-|-|-|
37
- |CORAL | CORAL | Hard Coral |
38
- |CORAL_BL | Bleached Hard Coral | Hard Coral |
39
-
40
-
41
- ## Metadata
42
- - https://www.fisheries.noaa.gov/inport/item/67962
43
- - https://www.fisheries.noaa.gov/inport/item/68138
44
 
 
 
 
 
45
  ## Dataset Details
46
 
47
  ### Dataset Description
48
 
49
- - **Curated by:** Ecosystem Sciences Division(ESD) | Pacific Islands Fisheries Science Center (PIFSC)
50
- - **Shared by:** NOAA Open Data
51
- - **License:** Public Domain (NOAA Open Data)
 
 
 
 
 
 
52
 
53
- ### Dataset Sources
54
 
55
- - **Data Repository:** [NOAA Open Data Dissemination (NODD) PIFSC Cloud ](https://console.cloud.google.com/storage/browser/nmfs_odp_pifsc/PIFSC)
56
-
57
- ## Uses
58
 
59
- ### Direct Use
60
 
61
- Intended to be used in marine biology research, real-time monitoring, and post-processing of underwater footage.
 
 
 
 
62
 
63
- ### Out-of-Scope Use
64
 
65
- The dataset is not suitable for tasks unrelated to coral reef in marine ecosystems.
 
 
66
 
67
- ## Dataset Structure
68
- Patch based (224x244 ) dataset.
69
- Dataset is pre-split using standard (70% training, 15% validation, and 15% test)
70
- image size: 224x244
71
- train images: 7292
72
- val images: 1562
73
- test images: 1565
74
 
 
75
 
76
- #### Personal and Sensitive Information
 
 
 
77
 
78
- This dataset contains no personal or sensitive information, as it consists solely of underwater imagery.
 
 
79
 
 
80
  ## Bias, Risks, and Limitations
81
 
82
  ### Bias
83
- -
 
 
 
 
 
 
84
 
85
- ### Recommendations
86
- -
 
 
 
 
 
 
87
 
88
  ## Metadata / Citation
89
 
90
- Ecosystem Sciences Division(ESD); Pacific Islands Fisheries Science Center (2025): Developing a semi-automated CoralNet Bleaching Classifier: annotations and imagery from survey sites across the Hawaiian Archipelago between 2014 and 2019. https://www.fisheries.noaa.gov/inport/item/67962
 
91
 
92
- #### Disclaimer
93
- This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA project content is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.
 
 
94
 
95
  ## Dataset Card Contact
96
 
97
- For questions or more information, please contact: Michael Akridge (Michael.Akridge@noaa.gov)
 
 
 
 
 
 
 
4
  tags:
5
  - coral
6
  - bleaching
7
+ - coral-reef
8
  - underwater-imagery
9
  - marine-biology
10
+ - benthic-surveys
11
+ - NOAA
12
+ pretty_name: NOAA-ESD-CORAL-Bleaching-Dataset v1
13
  language:
14
  - en
15
  configs:
 
30
  - CORAL_BL/*.jpg
31
  ---
32
  # Dataset Card for NOAA-ESD-CORAL-Bleaching-Dataset
 
33
 
34
+ ## Overview
35
 
36
+ For the development of machine learning models to classify coral health, specifically identifying **healthy hard coral (CORAL)** and **bleached hard coral (CORAL_BL)**.This dataset contains underwater imagery collected by NOAA's Ecosystem Sciences Division (ESD) and other benthic surveys.
37
+ ### Labels
 
 
 
 
 
 
 
38
 
39
+ | Label | Name | Functional Group |
40
+ |----------|----------------------|------------------|
41
+ | CORAL | Healthy Hard Coral | Hard Coral |
42
+ | CORAL_BL | Bleached Hard Coral | Hard Coral |
43
  ## Dataset Details
44
 
45
  ### Dataset Description
46
 
47
+ - **Curated by:** Ecosystem Sciences Division (ESD) | Pacific Islands Fisheries Science Center (PIFSC)
48
+ - **Shared by:** NOAA Open Data
49
+ - **License:** Public Domain ([NOAA Open Data](https://data.noaa.gov/))
50
+ - **Image Size:** 224 x 224 pixels (patch-based)
51
+ - **Total Images:** 10,419
52
+ - **Splits:**
53
+ - Training: 7,292 images (70%)
54
+ - Validation: 1,562 images (15%)
55
+ - Test: 1,565 images (15%)
56
 
57
+ Images were annotated through a combination of **randomly generated points** and **targeted survey locations**.
58
 
59
+ ## Dataset Structure
 
 
60
 
61
+ The dataset consists of **224x224 pixel image patches**, pre-split into train, validation, and test sets. Patches are sampled across **2 rows x 5 columns** stratified grids for consistent annotation coverage.
62
 
63
+ | Split | Images | Description |
64
+ |------------|---------|------------------------------------|
65
+ | Training | 7,292 | Used for model training. |
66
+ | Validation | 1,562 | Used for model hyperparameter tuning and early stopping. |
67
+ | Test | 1,565 | Used for final model evaluation. |
68
 
69
+ ## Dataset Sources
70
 
71
+ - **Data Repository:** [NOAA Open Data Dissemination (NODD) PIFSC Cloud](https://console.cloud.google.com/storage/browser/nmfs_odp_pifsc/PIFSC)
72
+ - **Imagery Collection Years:** 2014–2019
73
+ - **Region:** Hawaiian Archipelago
74
 
75
+ ---
 
 
 
 
 
 
76
 
77
+ ## Uses
78
 
79
+ ### Direct Use Cases
80
+ - Coral bleaching detection in marine ecosystems.
81
+ - Marine biology research and reef health assessments.
82
+ - Training machine learning models for underwater imagery analysis.
83
 
84
+ ### Out-of-Scope Uses
85
+ - Applications unrelated to benthic or coral reef ecosystems.
86
+ - Real-time monitoring without adequate validation or ground truth verification.
87
 
88
+ ---
89
  ## Bias, Risks, and Limitations
90
 
91
  ### Bias
92
+ - **Geographic Bias:** Data is primarily from the Hawaiian Archipelago; performance may differ in other regions.
93
+ - **Environmental Bias:** Imagery collected under certain lighting and seasonal conditions.
94
+
95
+ ### Recommendations for Use
96
+ - Validate models on new survey data before operational use.
97
+ - Augment datasets with **color variations, rotations, and noise** to improve robustness.
98
+ - Account for potential false positives, especially in complex benthic environments.
99
 
100
+ ### Limitations
101
+ - Models may underperform on color images if trained solely on the provided dataset.
102
+ - **Bleaching classification** may be affected by turbid water conditions and image quality variations.
103
+
104
+ ### Personal and Sensitive Information
105
+ - No personal, sensitive, or identifiable information is present.
106
+ - Images are of **marine environments** only.
107
+ ---
108
 
109
  ## Metadata / Citation
110
 
111
+ **Citation:**
112
+ Ecosystem Sciences Division (ESD); Pacific Islands Fisheries Science Center (2025).
113
 
114
+ **Related Metadata:**
115
+ - [Benthic Cover Derived from Analysis of Benthic Images (2019)](https://www.fisheries.noaa.gov/inport/item/59195)
116
+ - [Hawaiian Archipelago Coral Surveys (2014–2019)](https://www.fisheries.noaa.gov/inport/item/67962)
117
+ - [Benthic Monitoring Imagery](https://www.fisheries.noaa.gov/inport/item/68138)
118
 
119
  ## Dataset Card Contact
120
 
121
+ For questions or inquiries, contact:
122
+ **Michael Akridge** – Michael.Akridge@noaa.gov
123
+ Ecosystem Sciences Division (ESD), PIFSC | NOAA
124
+
125
+ ---
126
+ #### Disclaimer
127
+ This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA project content is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.